sam chemistry.pdf

download sam chemistry.pdf

of 164

Transcript of sam chemistry.pdf

  • 7/30/2019 sam chemistry.pdf

    1/164

    SSuurrffaaccee CChheemmiissttrryy oonn SSeellff--aasssseemmbblleedd

    MMoonnoollaayyeerrss

    PROEFSCHRIFT

    ter verkrijging van de graad van doctor aan de

    Technische Universiteit Eindhoven, op gezag van de

    rector magnificus, prof.dr.ir. C.J. van Duijn, voor een

    commissie aangewezen door het College voor

    Promoties in het openbaar te verdedigen

    op maandag 26 oktober 2009 om 16.00 uur

    door

    Claudia Hnsch

    geboren te Jena, Duitsland

  • 7/30/2019 sam chemistry.pdf

    2/164

    Dit proefschrift is goedgekeurd door de promotoren:

    prof.dr. U.S. Schubert

    en

    prof.dr. J.-F. Gohy

    Copromotor:

    dr. S. Hppener

    This research has been financially supported by the Dutch Organization for

    Scientific Research, NWO (VICI award for U.S. Schubert).

    Cover design: Daan Wouters and Claudia Hnsch

    Printed by: PrintPartners Ipskamp, Enschede, The Netherlands

    Surface Chemistry on Self-assembled Monolayers by Claudia Hnsch

    Eindhoven: Technische Universiteit Eindhoven 2009

    A catalogue record is available from the Eindhoven University of Technology

    Library

    ISBN: 978-90-386-2026-8

  • 7/30/2019 sam chemistry.pdf

    3/164

    SSuurrffaaccee CChheemmiissttrryy oonn SSeellff--aasssseemmbblleedd

    MMoonnoollaayyeerrss

    Kerncommissie

    prof.dr. U.S. Schubert (Eindhoven University of Technology)

    prof.dr. J.-F. Gohy (Eindhoven University of Technology)

    dr. S. Hppener (Eindhoven University of Technology)

    prof.dr.ir. R.A.J. Janssen (Eindhoven University of Technology)

    prof.dr. B.J. Ravoo (Westflische Wilhelms-Universitt Mnster)

    prof.dr. N.D. Spencer (Eidgenssische Technische Hochschule Zrich)

  • 7/30/2019 sam chemistry.pdf

    4/164

  • 7/30/2019 sam chemistry.pdf

    5/164

    FFrrMMuuttttiiuunnddVVaattii

  • 7/30/2019 sam chemistry.pdf

    6/164

  • 7/30/2019 sam chemistry.pdf

    7/164

    DDuuuunnddiicchh:: WWiirrssiinnddeeiinnss..

    IIcchhkkaannnnddiirrnniicchhttwweehhttuunn,, oohhnneemmiicchhzzuuvveerrlleettzzeenn..

    MMaahhaattmmaaGGaannddhhii

  • 7/30/2019 sam chemistry.pdf

    8/164

    TTaabbllee ooffCCoonntteennttss

    Chapter 1

    Chemical modification of self-assembled monolayers by surface reactions 1

    1.1. Introduction 2

    1.2. Nucleophilic substitution 3

    1.3. Click chemistry 8

    1.3.1. Click chemistry on azide terminated substrates 9

    1.3.2. Click chemistry on acetylene terminated substrates 11

    1.4. Metallo-supramolecular modification 15

    1.5. Aim and scope of the thesis 21

    1.6. References 23

    Chapter 2

    Chemical surface modification by click chemistry 29

    2.1. Introduction 30

    2.2. Clicking under conventional reaction conditions 31

    2.3. Clicking under microwave heating 36

    2.3.1. Stability tests on azide terminated silicon substrates under microwave

    irradiation 36

    2.3.2. Microwave-assisted surface functionalization by 1,3-dipolar cycloaddition 39

    2.3.2.1. Microwave-assisted clicking of propargyl alcohol onto azide

    terminated silicon substrates 41

    2.3.2.2. Microwave-assisted clicking of an acetylene functionalized

    poly(2-ethyl-2-oxazoline) onto azide terminated silicon substrates 43

    2.3.2.3. Comparison with reactions under conventional heating 44

    2.4. Conclusions 45

    2.5. Experimental details 45

    2.6. References 49

    Chapter 3

    Combination of different chemical surface reactions 53

    3.1. Introduction 54

    3.2. Nucleophilic substitution reactions 54

    3.2.1. Nucleophilic substitution of bromine by propargylamine 55

    3.2.2. Nucleophilic substitution of bromine by an amine functionalized terpyridine 59

    3.3. Supramolecular modification of silicon and glass substrates 63

    3.4. Conclusions 703.5. Experimental details 71

    3.6. References 77

  • 7/30/2019 sam chemistry.pdf

    9/164

    Chapter 4

    Structuring and functionalization of self-assembled monolayers by electro-oxidation81

    4.1. Introduction 82

    4.2. Local anodic oxidation 83

    4.2.1. Local anodic oxidation of substrates coated with organic films 86

    4.2.2. Conclusions 90

    4.3. Constructive nanolithography 90

    4.3.1. Post-modification of the structured surface areas 94

    4.3.2. Conclusions 98

    4.4. References 98

    Chapter 5

    Fabrication and functionalization strategies for nanometer-sized surface templates 107

    5.1. Introduction 108

    5.2. Local anodic oxidation of bromine terminated silicon substrates 109

    5.3. Constructive nanolithography on n-octadecyltrichlorosilane terminated

    monolayers 115

    5.4. Conclusions 121

    5.5. Experimental details 121

    5.6. References 123

    Chapter 6The preparation of patterned polymer brushes onto chemically active surface

    templates 125

    6.1. Introduction 126

    6.2. Surface-initiated atom transfer radical polymerization 127

    6.3. Surface-initiated ring-opening polymerization 132

    6.4. Conclusions 137

    6.5. Experimental details 137

    6.4. References 139

    Summary 142

    Samenvatting 145

    Curriculum vitae 148

    List of publications 149

    Acknowledgement 151

  • 7/30/2019 sam chemistry.pdf

    10/164

  • 7/30/2019 sam chemistry.pdf

    11/164

    CChhaapptteerr11

    CChheemmiiccaall mmooddiiffiiccaattiioonn ooffsseellff--aasssseemmbblleedd

    mmoonnoollaayyeerrss bbyy ssuurrffaaccee rreeaaccttiioonnss

    Abstract

    The functionalization of solid substrates by self-assembly processes provides the possibility to

    tailor their surface properties in a controllable fashion. One class of molecules, which

    attracted significant attention during the last decades, are silanes self-assembled on hydroxyl

    terminated substrates, e.g. silicon and glass. These systems are physically and chemically

    robust and can be applied in various fields of technology, e.g. electronics, sensors and others.

    The introduction of chemical functionalities can be obtained via two methods. One

    preparation method uses the self-assembly of pre-functionalized molecules, which can be

    synthesized by different synthetic routes. The second method utilizes chemical surface

    reactions for the modification of the monolayer. The following chapter will highlight a

    selection of chemical reactions, which have been used for the functionalization of solidsubstrates to introduce a wide range of terminal end groups.

    Parts of this chapter will be published: C. Haensch, S. Hoeppener, U. S. Schubert, in

    preparation.

  • 7/30/2019 sam chemistry.pdf

    12/164

    Chapter 1

    2

    1.1. Introduction

    Self-assembled monolayers (SAMs) have attracted significant attention since their

    introduction in 1980 by Sagiv.[1] Since then a large variety of self-assembly systems have

    been studied, such as thiols on gold[2-5] and alkylsilanes on silicon,[6-10] which represent the

    most popular combinations of self-assembling molecules and substrates. In particular, the

    self-assembly of silane molecules represents an interesting research area as they form

    chemically and physically stable covalently attached monolayers on technologically relevant

    surfaces, in particular silicon and glass.[6,11] The functionalization of surfaces provides the

    possibility to tailor the surface properties, e.g. wettability, friction, adhesion and conductivity,

    in a controlled fashion as the modification of the terminal end groups allows the tuning of

    these properties.[12] These surfaces find many applications in various fields, such as

    microelectronics, optoelectronics, thin-film technology, protective coatings, chemical sensors,

    biosensors, nanotechnology, bioactive surfaces, cell adhesion, protein adsorption and

    others.[13-18]

    Alkylsiloxane monolayers are usually prepared by a covalent adsorption process of self-

    assembling molecules, such as trichloro, trimethoxy or triethoxy silanes, onto the solid

    substrate.[5] The self-assembling molecule consists of three parts: the head group, the alkyl

    chain and the terminal end group.[16] The head group, i.e., trichloro-, trimethoxy or triethoxy

    silane, is responsible for the anchoring of the molecule onto the substrate. The alkyl chain

    provides the stability of the monolayer, due to van der Waals interactions, and influences the

    ordering of the SAM,[14] the terminal end group introduces chemical functionality into themonolayer system. Suitable molecules are to a certain extent commercially available or can be

    prepared by different chemical reactions. The synthesis of trichlorosilanes can be performed

    by, e.g., the reaction of bromine functionalized compounds with Mg, followed by the addition

    of SiCl4.[19] Furthermore, alkali metal organic compounds can be transformed to RSiCl3 by the

    reaction with SiCl4.[20] A third preparation method utilizes a three step synthesis, which starts

    from the chlorination of an alcohol with tri-n-butyl or triphenyl phosphine and CCl4, a

    Grignard reaction with the chlorinated product and Mg and subsequent addition of SiCl4.[21]

    An alternative possibility is the platinum catalyzed addition of HSiCl3 to carbon-carbondouble bonds.[7] The disadvantage of trichlorosilanes is, however, a high reactivity of the head

    group and the water sensitivity of these molecules. This limits therefore the possibility for the

    presence of a functional terminal end group due to incompatibility and/or interaction of the

    chlorosilane with the terminal end group, which can potentially prevent the self-assembly

    process and therefore the formation of a well-ordered monolayer. An elegant approach to

    overcome this problem is the use of chemical surface reactions on a precursor SAM with

    defined organization that is already assembled on a substrate. Surface chemistry represents

    here an important tool for the preparation of a large variety of different functional end groups.

    Several criteria, such as high yields obtained under mild reaction conditions, the compatibility

    with different functional groups, no required catalytic activation and the absence of

  • 7/30/2019 sam chemistry.pdf

    13/164

    Chemical modification of self-assembled monolayers by surface reactions

    3

    byproducts, are advantageous for such chemical surface modification reactions.[22] Several

    recent reviews highlight the use of different modification sequences to introduce chemical

    functionalities into monolayer systems.[23-26] The aim of this chapter is to present a selection

    of chemical surface reactions, such as nucleophilic substitutions, the click chemistry approach

    and metallo-supramolecular modification of, mainly, silicon and glass surfaces, to introduce

    versatile terminal end groups.

    1.2. Nucleophilic substitution

    Nucleophilic substitution reactions are an important class of chemical reactions in organic and

    inorganic chemistry.[27] Thereby, a nucleophile attacks an atom with a positive or partially

    positive charge, which is connected to a leaving group. Nucleophiles are electron rich species,

    which are electrically neutral or negatively charged and can be either ions or molecules. [28]

    Common nucleophiles are hydroxide, cyanide and azide ions, water, ammonia and others. The

    nucleophilic substitution follows two main mechanisms, the SN1 and SN2 reactions.[27] SN1

    reactions proceed in two steps; the first one involves the elimination of the leaving group and

    the formation of a carbenium ion, which reacts in a second step with the nucleophile. In

    comparison, the elimination of the leaving group and the addition of the nucleophile in SN2

    reactions occur simultaneously. While in organic chemistry in solution both reaction

    mechanisms occur, the nucleophilic substitution on solid substrates is mostly reported to

    follow the SN2 mechanism. The preference for the SN2 reaction mechanism could be due to

    the structure of the terminal end group of the monolayer, which is in most cases a primarycarbon atom. Typically reported nucleophlic substitution reactions in solution are the

    exchange of halogen atoms in alkyl halides by various nucleophiles, such as NH3, OH, N3,

    CN, etc., the Williamson ether synthesis, the Finkelstein reaction and others.[27-29] In 1988

    Balachander and Sukenik recognized the potential to use nucleophilic displacement reactions

    for the modification of solid substrates.[30] The authors described the preparation of amine

    terminated surfaces by the nucleophilic displacement of bromine terminated substrates with

    sodium azide and subsequent reduction of the N3 groups to NH2 functionalities. The

    complete exchange of bromine by azide was confirmed by the disappearance of the Br signalin the X-ray photoelectron spectroscopy (XPS) spectrum and the appearance of an absorption

    peak at 2098 cm-1 in the infrared (IR) spectrum. Two years later the authors published a series

    of nucleophilic transformations on alkyl bromine terminated substrates to introduce a large

    variety of functional groups into the monolayer.[31] Bromine terminated surfaces were reacted

    with various nucleophiles, such as SCN, S2-, S22- and N3, to generate different surface

    functionalities (Figure 1.1). IR spectroscopy and XPS as well as contact angle analysis were

    performed to investigate the conversion of the reactions and indicated a quantitative

    conversion of the bromine functionalities. Subsequent treatment with LiAlH4 and H2O2

    yielded SH, NH2 and SO2 moieties, respectively.

  • 7/30/2019 sam chemistry.pdf

    14/164

    Chapter 1

    4

    Si

    Br

    O OO

    C16

    SiO OO

    N3

    C16

    SiO OO

    SCN

    C16

    a. b.

    d. c.Si

    S

    OO

    Si

    S

    O OO

    C16

    SiOO

    SiO OO

    S

    C16

    Si

    Br

    O OO

    C16

    SiO OO

    N3

    C16

    SiO OO

    SCN

    C16

    a. b.

    d. c.Si

    S

    OO

    Si

    S

    O OO

    C16

    SiOO

    SiO OO

    S

    C16

    Figure 1.1. Schematic representation of nucleophilic substitution reactions on bromineterminated monolayers on glass substrates and Si ATR crystals. (a) KSCN, (b) Na2S, (c)

    Na2S2 and (d) NaN3.

    Fryxell et al. described the nucleophilic displacement reactions on mixed monolayers,

    terminated with bromine and methyl groups.[32] The authors showed the substitution of Br by

    sodium azide, thiocyanate, and cysteine. In contrast to the results of Balachander and Sukenik

    the required reaction times were significantly longer. The authors explained the prolonged

    reaction times by the difference in the quality of the prepared monolayers, as dense, highly

    rigid monolayers were used for the chemical transformations. Additionally, the poor reactivity

    of bromine terminated alkyl SAMs was assigned to the fact that the nucleophile needs to

    penetrate below the surface to attack the carbon atom from the backside, resulting in a

    substantial kinetic barrier of the nucleophilic substitution. Baker and Watling demonstrated

    the functionalization of alkyl terminated monolayers via free radical bromination and

    subsequently modified the surface further.[33] In their report the authors treated a monolayer of

    hexadecylsiloxane with bromine in CCl4 to obtain bromine terminated SAMs. Thereby,

    bromination occurred at the methyl and the methylene groups in the monolayer. The bromine

    terminated monolayers were afterwards treated with different nucleophiles, such as azide,sulfide and thiocyanate. Thereby, a quantitative exchange of bromine by N3 and S

    2- was

    observed, whereas thiocyanates could be incorporated into the SAM with yields of 80 to 90%.

    The nucleophilic substitution of Br by N3 represents an important chemical surface reaction

    as azide moieties can be used for further post-modification reactions. Heise and co-workers

    described the in-situ modification of mixed silane monolayers by nucleophilic transformation

    of Br by N3 and subsequent reduction to NH2,[34] which could be used for the grafting of

    polypeptides onto the substrates.[35] The use of amine terminated trimethoxysilanes was not

    favorable, as the self-assembly of these compounds resulted in the formation of disorderedmonolayers. Therefore, the previously mentioned two step procedure was chosen to obtain

    amine terminated monolayers of good quality. Thereby, a reaction yield of 80% was achieved

  • 7/30/2019 sam chemistry.pdf

    15/164

    Chemical modification of self-assembled monolayers by surface reactions

    5

    for the nucleophilic substitution of Br by N3 and 100% for the reduction step to obtain the

    amine moieties. The fabrication of well-defined polyimide functionalized surfaces was

    reported by Lee and Ferguson.[36] Thereby, bromine terminated monolayers served as pre-

    functionalized SAMs, which were reacted with sodium azide, followed by treatment with

    LiAlH4 to yield NH2 functionalities. The nucleophilic transformation was characterized by

    contact angle measurements, IR spectroscopy and XPS and revealed the full exchange of Br

    by N3. The contact angle decreased from 81-85 for the Br terminated surface to 75-79 for

    the N3 moieties. The IR spectrum revealed the appearance of an absorption peak at

    2097 cm-1 for the azide groups and the preservation of the CH2 vibrations, indicating that no

    significant damage of the monolayer occurred. XPS revealed the disappearance of the Br(3d)

    signal at 71 eV and the appearance of two peaks at 402 and 405 eV in the N(1s) region, which

    could be assigned to the N3 moieties present on the surface. Wang et al. reported a study on

    the preparation of maleimido terminated SAMs via different synthetic routes.[37] One method

    included the use of nucleophilic substitution to obtain azide moieties, which were reduced to

    NH2 groups and subsequently reacted with sulfosuccinimidyl 4-(N-maleimidomethyl)

    cyclohexane-1-carboxylate to yield the desired surface functionalities.

    An interesting surface modification route via nucleophilic substitution was demonstrated by

    Chupa et al.[38] A bromine terminated silicon oxide substrate was treated with anions, which

    were formed by the reaction of 4-methylpyridine with lithium diisopropylamide. The resulting

    pyridyl moieties were coupled with OsO4 and C60 to introduce buckminsterfullerene groups

    for the modification of the electronic and optical responses of the solid substrates. The

    introduction of amine functionalities onto silicon oxide surfaces was realized via the hiddenamine route reported by Ofir and co-workers (Figure 1.2a).[39] It involves the nucleophilic

    displacement of bromine moieties by potassium phthalimide after three hours of reaction time,

    followed by cleavage of the protecting group after one minute to yield NH2 groups. The

    authors emphasized the advantage of this reaction pathway as the functionalization of surfaces

    with amine moieties is faster compared to the exchange by NaN3 and the subsequent

    reduction.

    Si

    I

    O OO

    Si

    S

    O OO

    3OS-

    Na+

    b. b. c.a.

    Si

    Br

    O OO

    Cn

    N OO

    SiO OO

    Cn

    NH2

    SiO OO

    Cn

    Si

    I

    O OO

    Si

    S

    O OO

    3OS-

    Na+

    b. b. c.a.

    Si

    Br

    O OO

    Cn

    N OO

    SiO OO

    Cn

    NH2

    SiO OO

    Cn

    Figure 1.2.Schematic representation of nucleophilic substitution reactions on bromine and

    iodine terminated monolayers on glass, quartz, indium-tin oxide and silicon oxide substrates.

    (a) Nucleophilic substitution with potassium phthalimide, (b) cleavage of the phthalimide

  • 7/30/2019 sam chemistry.pdf

    16/164

    Chapter 1

    6

    groups by CH3NH2 and (c) nucleophilic substitution with mercapto ethanesulfonic acid

    sodium salt.

    The formation of polyaniline films via a four step modification sequence was demonstrated by

    Sfez et al.[40] Monolayers of iodopropyltrimethoxysilane were treated with mercapto

    ethanesulfonic acid sodium salt and resulted in the substitution of I by SO 3Na (Figure

    1.2b). Chemical proof for the successful substitution was obtained by XPS analysis, which

    revealed the complete disappearance of the iodine signal after substitution and the appearance

    of a sodium signal at ~ 1070 eV. These surfaces were furthermore utilized for the attachment

    of aniline monomers via electrostatic interactions, which were polymerized by either chemical

    or electrochemical oxidation. Koloski and co-workers performed nucleophilic displacement

    reactions on benzyl halide (Cl and I) terminated substrates.[41] For this purpose, monolayers

    of benzyl chloride were treated with sodium iodide, which resulted in an exchange of Cl by

    I with yields between 45 and 60%. This reaction is also known as Finkelstein reaction. The

    incomplete exchange of Cl by I was explained by the larger size of the iodine atom and the

    differences in the C-I and C-Cl bond lengths. The benzyl chloride and iodide terminal groups

    were subsequently used afterwards for substitution reactions with N-lithiodiaminoethane and

    3-lithiopyridine. UV/vis spectroscopy and XPS were performed to investigate the conversion

    as well as the rate of the reaction and revealed a higher reactivity for the iodine terminated

    species.

    As already mentioned earlier, not only negatively charged ions can act as nucleophiles, but

    also neutral molecules, such as water, amines and thiols, can be used for the nucleophilicdisplacement. The reaction of 16-bromohexadecyl and brominated hexadecylsiloxane

    monolayers with mercury(II) perchlorate in a water-dimethoxyethane mixture for 3 and 24 h

    resulted in a quantitative exchange of Br by OH, respectively. [33] Studies on the reactivity

    of gold clusters, protected with mixed monolayers of bromine and methyl groups, in SN2

    reactions with primary amines were reported by Templeton and co-workers.[42] The authors

    used n-propylamine, isopropylamine and tert-butylamine as nucleophiles and three different

    chain lengths of the bromoalkanethiolate chains were investigated. The selectivity and rate of

    the reaction was found to be controlled by the size of the nucleophile as well as by the lengthof the bromoalkanethiolate and the surrounding alkanethiolate chains. Lee and co-workers

    investigated the selective attachment of peptides onto halide terminated surfaces.[43] This

    approach involved the nucleophilic substitution of halide terminated substrates by tri- and

    nonapeptides via the thiol group of cysteine moieties. The surfaces, consisting of alkyl and

    benzyl halides and -haloacetyl monolayers, showed differences in electrophilicity depending

    on the halide atoms. The reactivity towards the exchange by thiols was found to decrease

    from iodine to bromine and chlorine and from -haloacetyl over benzyl to alkyl. This

    methodology represents a powerful tool for the controlled attachment of peptides and proteins

    to various substrates and could furthermore be used for the fabrication of biocompatible

    inorganic materials and biosensors. Besides of previously described nucleophilic

  • 7/30/2019 sam chemistry.pdf

    17/164

    Chemical modification of self-assembled monolayers by surface reactions

    7

    displacement reactions on halide terminated monolayers also the use of other functional end

    groups for this reaction mechanism has been reported. Fryxell and co-workers demonstrated

    the nucleophilic substitution on mixed monolayers of trifluoroethyl ester and methyl moieties

    by primary amines, e.g. N,N-dimethylethylenediamine, hydrazine, and hydroxylamine.[32] A

    low amount of trifluoroethyl ester groups on the surface resulted in the exchange of the

    trifluoroethyl functionalities and the formation of amide groups. With increasing percentage

    of the trifluoroethyl moieties a competitive cross-linking reaction occurred, which resulted in

    the formation of imide functionalities. Maleimido terminated silicon substrates were exposed

    to a large variety of different nucleophilic compounds, e.g. decylthiol, octadecylthiol,

    aliphatic amines, isoindole, thioacetamide and thiol-tagged DNA oligonucleotides (Figure

    1.3).[37] Characterization of the substitution reactions with decylthiol and octadecylthiol was

    performed by attenuated total reflection infrared (ATR-IR) spectroscopy and revealed an

    increase in the absorption intensities of the methylene vibrations. The attachment of aliphatic

    amines, isoindole and thioacetamide was investigated by the appearance of an absorption peak

    between 2100 and 2300 cm-1 in the IR spectrum for the CN groups, which were introduced

    in the nucleophiles as IR spectroscopic marker. Biomolecules, such as oligonucleotides, could

    also be successfully introduced into the monolayer system. XPS revealed the appearance of a

    signal at 133.9 eV, which was assigned to the phosphates in the DNA backbone.

    N

    SiO OO

    OO

    Cn

    N

    SiO OO

    OO

    NH(CH2)6CN

    Cn

    a. b. c. d. e.

    N

    SiO OO

    OO

    S(CH2)

    Cn

    xCH3

    N

    SiO OO

    OO

    N

    CN

    Cn

    SN

    N

    SiO OO

    O CN

    Cn

    N

    SiO OO

    OO

    S-DNA

    Cn

    N

    SiO OO

    OO

    Cn

    N

    SiO OO

    OO

    NH(CH2)6CN

    Cn

    a. b. c. d. e.

    N

    SiO OO

    OO

    S(CH2)

    Cn

    xCH3

    N

    SiO OO

    OO

    N

    CN

    Cn

    SN

    N

    SiO OO

    O CN

    Cn

    N

    SiO OO

    OO

    S-DNA

    Cn

    Figure 1.3. Schematic representation of nucleophilic substitution reactions on maleimido

    terminated monolayers on silicon oxide substrates. (a) Decylthiol, (b) aliphatic amine, (c)

    isoindole, (d) thioacetamide and (e) DNA-SH.

  • 7/30/2019 sam chemistry.pdf

    18/164

    Chapter 1

    8

    Sawoo and co-workers described the modification of silicon and glass surfaces for protein

    immobilization via nucleophilic displacement reactions.[56] These included the nucleophilic

    exchange of bromine by azide and subsequent copper-free clicking with an alkoxy Fischer-

    type metallocarbene complex. In a second nucleophilic substitution step the SAM was reacted

    either with 1-pyrenemethylamine, which acted as a fluorescent marker, or with bovine serum

    albumin (BSA). The introduced 1-pyrenemethylamine revealed a broad emission at 480 nm in

    the fluorescence spectrum indicating the successful attachment of the Fischer carbene

    complex to the substrate. The attachment of the protein was investigated by atomic force

    microscopy (AFM), which showed a dense coverage of the surface. This research

    demonstrated the covalent linkage of biomolecules onto solid substrates under mild reaction

    conditions.

    These selected examples demonstrate the potential of nucleophilic substitution reactions

    conducted on solid substrates and present an interesting modification sequence for the

    introduction of various functional end groups into the monolayer. Thereby, mainly halide

    terminated surfaces were used due to a high reactivity of the halides towards the exchange by

    nucleophilic molecules. Subsequent surface reactions can be additionally applied to these

    monolayers to further expand the range of functional end groups.

    1.3. Click chemistry

    A different reaction mechanism also matches the criteria for efficient surface reactions. The

    click chemistry approach has attracted significant attention in various parts of chemistry, suchas in materials science and polymer chemistry during the last years,[44-46] since it was

    introduced in 2001 by Sharpless.[47] The concept addresses several criteria. The reaction has to

    be modular and wide in scope, provides furthermore very high yields, generates inoffensive

    byproducts, is stereospecific, can be performed under mild reaction conditions and with easily

    available starting materials.[47] The purification can be preferably achieved by

    nonchromatographic methods. A large variety of chemical transformations are part of this

    approach, e.g. 1,3-dipolar cycloaddition reactions and Diels-Alder transformations,

    nucleophilic substitution chemistry, formation of ureas, thioureas, aromatic heterocycles,oxime ethers, hydrazones, amides, and additions to carbon-carbon multiple bonds, e.g.

    epoxidation, dihydroxylation, aziridination, sulfenyl halide addition and Michael additions.

    The most perfect click reaction up to date is the Huisgen 1,3-dipolar cycloaddition of organic

    azides and acetylenes.[48,49] Thereby, a mixture of 1,4- and 1,5-disubstituted 1,2,3-triazole

    systems is formed. A variant of this reaction is the copper catalyzed coupling of azides and

    terminal acetylenes, which selectively results in the formation of the 1,4-disubstituted

    triazole.[50,51] The general characteristics of the click chemistry approach fit very well with the

    requirements of chemical reactions performed on surfaces. This is documented by a large

    number of literature examples, which demonstrate the use of click chemistry for the

    introduction of functional groups into the monolayer system on different substrates, e.g. gold,

  • 7/30/2019 sam chemistry.pdf

    19/164

    Chemical modification of self-assembled monolayers by surface reactions

    9

    silicon and glass.[52-54] Thereby, two synthetic preparation methods are used to introduce

    1,2,3-triazole moieties into the monolayer. Whereas the first method uses azide terminated

    substrates for the coupling with functional acetylenes, the second modification sequence

    involves the generation of surfaces with terminal acetylene moieties. Both modification

    sequences will be discussed in more detail in the following sections.

    1.3.1. Click chemistry on azide terminated substrates

    The first preparation method to obtain 1,2,3-triazoles utilizes azide terminated substrates,

    which can be obtained by the nucleophilic displacement of Br by N3, and subsequent

    cycloaddition reaction. The first report on the Huisgen 1,3-dipolar cycloaddition on silicon

    substrates, covered with a layer of native oxide, was published by Lummerstorfer and

    Hoffmann.[22] 11-Bromoundecylsiloxane monolayers were substituted by sodium azide and

    N3 functionalities were obtained, which were reacted with different acetylenes (Figure 1.4).

    Methoxycarbonyl and bis-(ethoxycarbonyl) acetylene could be quantitatively coupled to the

    N3 terminated surfaces after reaction times of 24 hours at 70 C. Surface-enhanced IR

    reflection spectroscopy was performed to characterize the substrates and revealed the

    complete disappearance of the azide absorption peak, which was found at 2102 cm -1. The

    authors used no catalyst, which resulted most likely in the formation of a mixture of the 1,4-

    and 1,5-disubstituted products; however, the authors favored the 1,4-disubstituted triazole due

    to steric reasons.

    Si

    Br

    O OO

    C11

    SiO OO

    N3

    C11

    SiO OO

    N

    N

    N

    RR

    C11

    R = COOMe, R= HR = R= COOEt

    a. b.

    Si

    Br

    O OO

    C11

    SiO OO

    N3

    C11

    SiO OO

    N

    N

    N

    RR

    C11

    R = COOMe, R= HR = R= COOEt

    a. b.

    Figure 1.4.Schematic representation of the 1,3-dipolar cycloaddition on bromine terminatedmonolayers on silicon oxide substrates. (a) Nucleophilic substitution with sodium azide and

    (b) cycloaddition with methoxycarbonyl or bis-(ethoxycarbonyl) acetylene.

    Prakash et al. demonstrated the cycloaddition of linear and branched polymers, e.g. poly-

    (amido amine) dendrimers, poly(2-ethyloxazoline), poly(ethylene glycol) and poly(ethylene

    imine), to N3 terminated silica and microfluidic glass channels.[55] The substrates were

    characterized by Fourier transform infrared (FT-IR) spectroscopy and XPS as well as by

    contact angle and electroosmotic flow (EOF) measurements. Investigations by XPS revealed

    the disappearance of the Br peak after the nucleophilic substitution and the appearance of a

    characteristic split peak in the N(1s) region for the N3 moieties. After cycloaddition the

  • 7/30/2019 sam chemistry.pdf

    20/164

    Chapter 1

    10

    double peak disappeared and a single peak was observed in the N(1s) region. FT-IR ATR

    spectroscopy furthermore indicated the successful cycloaddition of the alkyne functionalized

    polymers to N3 surfaces by the disappearence of the absorption peak at 2100 cm-1, which is

    characteristic for the azide moiety. EOF measurements were performed to classify the

    electroosmotic velocity in the modified microchannels. The modification with triazoles

    resulted in a change of the zeta potential and therefore the EOF in the channels could be

    changed in a systematic fashion. The fabrication of bio-active surfaces via the copper-free

    click reaction was demonstrated by Sawoo and co-workers.[56] Azide terminated glass and

    silicon surfaces were reacted with a Fischer carbene complex for the immobilization of

    proteins, which could find potential applications in the fabrication of biosensors. Ellipsometry

    revealed an increase in height of the monolayer of about 0.66 nm after the cycloaddition.

    Immobilization tests on this surface were performed with bovine serum albumin. AFM and

    high resolution scanning electron microscopy were performed to analyze the immobilized

    proteins on the surface. The amount of molecules was calculated to be ~ 330 molecules per

    m2. Reaction with dansyl chloride allowed furthermore to investigate the substrate by

    fluorescent microscopy. The chemical derivatization of hydrogenated silicon substrates was

    demonstrated by Marrani and co-workers.[57] The silicon surfaces were treated with

    11-bromo-1-undecene, followed by substitution with NaN3 and subsequent cycloaddition of

    ethynylferrocene under Cu(I) catalysis. Next to the characterization by XPS, which revealed

    the successful attachment, also cyclic voltammetry was performed to investigate the

    functionalized substrates. The electrochemical properties of the ferrocene terminated

    substrates revealed the formation of a well-defined SAM as well as an efficient chargetransfer reaction to the ferrocene redox head group. Vestberg et al. presented the formation of

    multilayer films via click chemistry.[58] Thereby, NH2 terminated silicon substrates were

    reacted with 4-azidobutanoic anhydride to obtain azide functionalities onto the surface. These

    moieties were further modified by alternating cycloaddition reactions with acetylene and

    azide terminated dendrimers to obtain multilayers. Ellipsometry was used to measure the

    thickness of each layer and XPS revealed structural information about the multilayer. Another

    example of regio- and chemoselective immobilization of proteins onto glass surfaces was

    presented by Gauchet et al. (Figure 1.5).

    [59]

    Thereby, azide functionalized substrates wereprepared via a multi step procedure, utilizing the transformation of NH2 surfaces to

    carbamates followed by the attachment of azide terminated PEG-containing amine linkers and

    subsequent deactivation of the residual carbamates. Afterwards a green fluorescent protein

    was attached via click chemistry and was analyzed by phosphorimaging, which revealed the

    attachment of the protein due to the appearance of a fluorescent signal.

  • 7/30/2019 sam chemistry.pdf

    21/164

    Chemical modification of self-assembled monolayers by surface reactions

    11

    a. b. c.

    Si

    NH2

    O OO

    Si

    NH

    O OO

    OO

    N OO

    NH

    O

    NH

    O

    O

    O

    N

    N

    N

    protein

    Si

    NH

    O OO

    NHO

    NH

    O

    NH

    O

    O

    O

    N3

    Si

    NH

    O OO

    NHO

    8 8

    a. b. c.

    Si

    NH2

    O OO

    Si

    NH

    O OO

    OO

    N OO

    NH

    O

    NH

    O

    O

    O

    N

    N

    N

    protein

    Si

    NH

    O OO

    NHO

    NH

    O

    NH

    O

    O

    O

    N3

    Si

    NH

    O OO

    NHO

    8 8

    Figure 1.5.Schematic representation of the 1,3-dipolar cycloaddition on amine terminated

    monolayers on glass substrates. (a) Reaction with N,N-disuccinimidyl carbonate, (b)

    attachment of an azide terminated PEG-containing amine linker and (c) cycloaddition with a

    green fluorescent protein.

    Govindaraju and co-workers introduced the functionalization of glass substrates via the click

    sulfonamide reaction.[60] Sulfonylazide terminated surfaces were reacted with alkyne modified

    biomolecules, followed by the immobilization of fluorescently labelled proteins. The

    presented results demonstrated the site- and chemoselectivitely immobilization of alkyne

    terminated molecules under mild reaction conditions. The fabrication of a protein microarray

    was demonstrated by Lin and co-workers.[61]

    Azide terminated glass surfaces were preparedby a two step synthesis starting from amine modified slides, which were reacted with glutaric

    acid bis-N-hydroxysuccinimide ester and subsequent treatment with 3-azidopropanylamine.

    Further reaction with enhanced green fluorescent proteins under Cu(I) catalysis resulted in

    protein functionalized substrates, which were analyzed by fluorescence microscopy and

    revealed the preservation of the tertiary structure of the protein.

    1.3.2. Click chemistry on acetylene terminated substrates

    The second possibility to implement click chemistry into surface modification is the

    functionalization of silicon surfaces with terminal acetylene moieties, which can be achieved

  • 7/30/2019 sam chemistry.pdf

    22/164

    Chapter 1

    12

    by different approaches. Acetylenylation can be obtained by chlorination of hydrogenated

    silicon and subsequent reaction with NaCCH.[62] An electroactive benzoquinone was

    coupled to the CCH functionalities and resulted in a coverage of 7% of the molecule on the

    surface (Figure 1.6). The low yield was explained by the assumption that effective click

    reactions could only take place at the step edges of the Si(111) substrate. Subsequently

    applied surface chemistry resulted in the immobilization of ferrocene and biotin onto these

    surfaces. The presented results are supposed to find applications in the selective

    biopassivation of arrays of various types of sensor devices.

    H

    a. b. c.

    Cl

    NH

    N N

    N

    O O

    O

    H

    H

    a. b. c.

    Cl

    NH

    N N

    N

    O O

    O

    H

    Figure 1.6. Schematic representation of the 1,3-dipolar cycloaddition on hydrogenated

    silicon substrates. (a) PCl5, (b) Na-CCH and (c) cycloaddition with benzoquinone.

    Ostaci et al. reported the use of ethynyldimethylchlorosilane to obtain acetylene terminated

    surfaces on silicon substrates covered with a 525 m thick layer of SiO2.[63] Thereby, theacetylene group is directly attached to the silicon atom, which prevents the formation of a

    well-ordered monolayer. These surfaces were used to perform click reactions with different

    azide terminated polymers, e.g. polystyrene, poly(ethylene oxide) and poly(methyl

    methacrylate). Polymer brushes with heights of ~ 6 nm could be obtained by this approach,

    which offers therefore the possibility to graft a large variety of different polymer systems onto

    the surface. Yam and co-workers demonstrated the functionalization of silicon substrates with

    acetylene moieties by the reaction of terminal NEt2 groups with organic molecules

    containing acidic protons.[64,65]

    The NEt2 terminated surfaces were obtained by the treatmentof OH functionalized substrates with SiCl4 or SnCl4 followed by the reaction with HNEt2.

    [64]

    Subsequent reaction with different modified dialkynes, containing acidic protons, led to the

    fabrication of various terminal CCH moieties. An improvement of the procedure

    concerning the amount of reaction steps was published a few years later. [65] Herein, OH

    functionalized surfaces were reacted with Sn(NEt2)4 to obtain the NEt2 groups in one steps.

    The formation of well-ordered acetylene terminated monolayers was reported by different

    groups via the reaction of hydrogenated Si with 1,8-nonadiyne[66-68] or 1,6-heptadiyne.[69]

    Ciampi and co-workers presented the use of 1,8-nonadiyne for the fabrication of CCHterminated silicon and demonstrated subsequent click chemistry reactions (Figure 1.7). [66-68]

    The acetylene monolayers were characterized by contact angle measurements, XPS and X-ray

  • 7/30/2019 sam chemistry.pdf

    23/164

    Chemical modification of self-assembled monolayers by surface reactions

    13

    reflectrometry and revealed well-formed and densely packed monolayers. These CCH

    moieties were afterwards used for the 1,3-dipolar cycloaddition with various azides, including

    1-azidobutane, 4-azidophenacyl bromide, 11-azido-3,6,9-trioxaundecan-1-ol, azidomethyl-

    ferrocene and others. XPS was utilized to calculate the chemical conversion of the reaction

    and revealed yields between 35 and 80% using various reaction conditions. The conditions for

    the cycloaddition of azidomethylferrocene onto Si were optimized, using non-aqueous as well

    as aqueous conditions and different copper species as catalyst.[67] The use of copper(II) sulfate

    pentahydrate and sodium ascorbate resulted in the formation of triazole terminated silicon

    with a 45% yield without the contamination of the substrate with Cu, which was observed for

    the use of CuI-P(OEt)3 and CuI. The XPS spectra revealed in these cases the presence of Cu.

    Cyclic voltammetry was performed and showed the characteristic behavior of the ferrocene

    molecules. These modified surfaces could find possible applications for the preparation of

    biosensors and memory devices. Experiments concerning the modification of porous silicon

    substrates by the click chemistry approach were performed under Cu(I) catalysis, using

    copper(II) sulfate pentahydrate and sodium ascorbate, and revealed a non-quantitative

    cycloaddition.[68] The addition ofN,N,N,N-tetramethylethane-1,2-diamine, which acted as a

    ligand for the copper ions, resulted in almost quantitative conversions. The functionalization

    of these porous silicon substrates with oligomers of ethylene oxide could be interesting for the

    fabrication of biosensing interfaces, as these surfaces revealed antifouling properties.

    H

    a. b.

    N

    R

    N

    N Br

    O

    OO

    OOH

    R =

    H

    a. b.

    N

    R

    N

    N Br

    O

    OO

    OOH

    R =

    Figure 1.7. Schematic representation of the 1,3-dipolar cycloaddition on hydrogenated

    silicon substrates. (a) Reaction with 1,8-nonadiyne and (b) cycloaddition with acetylene

    functionalized molecules.

    Britcher et al. also demonstrated the functionalization of porous silicon wafers by click

    chemistry.[69] 1,6-Heptadiyne was reacted with hydrogenated Si, followed by the coupling of

    an azide terminated PEG. The successful attachment of the polymer was proven by XPS.

    Treatment of the surface with human serum albumin revealed their resistance towards protein

    adsorption and the substrates were suggested to be useful for targeted protein delivery

    applications. Another possibility to obtain acetylene terminated surfaces is the use of chemical

    surface reactions. Vestberg et al. presented the formation of acetylene moieties by reaction of

    NH2 surface groups with 4-pentynoic anhydride.[58] Alternating cycloaddition with azide andacetylene terminated dendrimers resulted in the formation of dendritic multilayers. This

  • 7/30/2019 sam chemistry.pdf

    24/164

    Chapter 1

    14

    modification sequence allowed the growth of extremely regular and defect-free dendritic thin

    films, which thicknesses could be controlled by the generations of the dendrimer. A similar

    approach to obtain acetylene moieties was presented by Long and co-workers, who reacted

    NH2 functionalized silicon supports with 4-pentynoic acid, which resulted in the formation

    of acetylenes moieties.[70] These groups were furthermore used for cycloaddition reactions

    with an azide functionalized dendron. This surface modification was not only shown for an

    entire substrate, but was also performed with an AFM tip to obtain localized triazoles. Several

    literature examples demonstrated the use of click chemistry for the preparation of active

    biosurfaces. The introduction of CCH moieties via reaction of carboxylic acid terminated

    silicon or glass substrates with a bifunctional propargyl-derivatized linker was described by

    Gallant and co-workers.[71] This was followed by cycloaddition of the acetylene moieties with

    an azide functionalized peptide by using CuSO4 and sodium ascorbate as catalytic species.

    Cell adhesion tests were performed with smooth muscle cells and were analyzed by

    fluorescence microscopy. The presented results could find applications in biomaterials

    research. Sun et al. demonstrated the surface modification via the reaction of maleimido

    terminated glass with an alkyne-PEG4-cyclodiene linker, which resulted in the formation of

    CCH groups.[72] Subsequent clicking with different biomolecules, e.g. biotin, lactose and a

    recombinant protein, was successful, which was demonstrated by subsequent labeling with

    fluorescent dyes and confocal fluorescence imaging. Seo and co-workers introduced the

    reaction of amine terminated glass chips with succinimidyl N-propargyl glutariamidate to

    yield terminal CCH moieties.[73,74] The acetylene terminated substrates were afterwards

    treated with azido functionalized DNA under CuI catalysis and were analyzed by AFM andcontact angle measurements. Subsequent, DNA polymerase reactions using photocleavable

    fluorescent nucleotides were carried out to investigate the functionality, accessibility and

    stability of the attached DNA. Meng and co-workers prepared chemical functionalized porous

    silicon substrates for the application in desorption/ionization silicon mass spectrometry

    (DIOS-MS).[75,76] DIOS-MS provides the possibility to analyze small molecules without the

    use of a matrix using standard MALDI instrumentation. For this purpose acetylene

    functionalized surfaces were treated with an azide functionalized triazine derivative. These

    CCH moieties were either synthesized by the reaction of amine terminated silicon surfaceswith 4-pentynoyl chloride, by the reaction of hydrogenated silicon substrates with

    1,6-heptadiyne or by the reaction of maleimide functionalized silicon with an acetylene

    modified triazenyl furan dienophile.

    The Huisgen 1,3-dipolar cycloaddition of azides and acetylenes allows the modification of

    solid substrates under mild reaction conditions as demonstrated by the summarized literature

    examples. Furthermore a large variety of functional groups can be incorporated into the SAM

    as this reaction mechanism tolerates a wide range of different functionalities. The surface

    modification by click chemistry leads to the construction of bioactive surfaces as well as

    electrochemically active substrates. The use of copper(I) catalysts results additionally in the

    formation of stereoselective reaction products.

  • 7/30/2019 sam chemistry.pdf

    25/164

    Chemical modification of self-assembled monolayers by surface reactions

    15

    1.4. Metallo-supramolecular modification

    The fabrication of smart surfaces with tailor-made functional groups is an important research

    area in various fields of technology.[77] Thereby, it is of great importance to control and switch

    the surface properties in a reliable fashion. Such systems find many potential applications in,

    e.g. sensors, memory elements, optical/electronic switches, nanodevices, displays, data

    storage or can be used for the micro-engineering of smart templates for bioseparation.[78-80]

    The fabrication of such systems can be achieved by, e.g., the functionalization of surfaces

    with supramolecular binding motifs. Interesting literature examples include the modification

    of silicon and glass supports with cyclodextrins,[81-89] which can be used for supramolecular

    reactions with dendrimers or adamantly functionalized molecules, and the functionalization

    with DNA and RNA.[90] Another class of suitable candidates for the fabrication of such

    molecular switches and/or responsive surfaces are metal complexes as they allow the

    introduction of interesting optical and electrical properties via the metal-ligand interaction

    within the monolayer system.[77,91,92] These surface assemblies can change their properties by

    triggers in their environment, such as electrical, mechanical, and chemical influences, or

    changes in pH value or temperature.[93-95] Besides the functionalization of silicon and glass

    supports with metallo-supramolecular building blocks also other interesting metal-based

    modification sequences on various surfaces will be presented in the following paragraphs. The

    preparation of such metal-based surfaces can be achieved via different chemical routes. One

    possibility is the synthesis of self-assembling molecules containing the metal complex.

    Literature examples demonstrated the fabrication of various metal complexes, includingcobalt and iron containing phthalocyanines,[96] amino acids coordinated with cobalt,[97]

    bipyridine ligands complexed with osmium[78,79,95,98,99] and ruthenium ions,[95] ammonia

    terminated ruthenium complexes,[80,91] oxo-centered triruthenium complexes[77,100] and

    metallodendrimers[101] on various surfaces (Figure 1.8).

  • 7/30/2019 sam chemistry.pdf

    26/164

    Chapter 1

    16

    N

    NN

    N

    NN

    Os

    N

    Si(OMe)3

    +

    2+

    3 X- (X = I, PF6)

    S

    NH

    NH2

    O

    O

    O

    CoO

    OO

    NO

    O

    O

    2

    S

    NH

    N

    O

    S

    NH

    N

    O

    Ru

    O

    Ru

    O

    OO

    RuO O

    O

    OO

    O

    O

    OC

    O

    O

    N

    a. b. c.

    N

    NN

    N

    NN

    Os

    N

    Si(OMe)3

    +

    2+

    3 X- (X = I, PF6)

    S

    NH

    NH2

    O

    O

    O

    CoO

    OO

    NO

    O

    O

    2

    S

    NH

    N

    O

    S

    NH

    N

    O

    Ru

    O

    Ru

    O

    OO

    RuO O

    O

    OO

    O

    O

    OC

    O

    O

    N

    a. b. c.

    Figure 1.8.Schematic representation of the self-assembling molecules, which can be used for

    the attachment onto various surfaces. (a) Amino acids coordinated with cobalt ions, (b)

    bipyridine ligands complexed with osmium and (c) oxo-centered triruthenium complexes.

    Ozoemena and co-workers described the self-assembly of octahydroxyethylthio- and

    octabutylthiometallophthalocyanine complexes, containing iron or cobalt ions, onto gold

    electrodes.[96] These monolayers revealed electrocatalytic activity towards the oxidation of

    thiols and thiocyanates in acidic environment with the best performance observed under pHvalues ranging from 2 to 9. The detection limit was found to be between 10-6 and 10-7 mol

    dm-3. Interestingly, these electrodes showed no fouling after storage in acidic pH for a month.

    Moreover, increase of the pH value above 10 led to the desorption of the monolayer.

    Negatively charged cobalt complexes functionalized with amino acids could be assembled

    onto Au electrodes and were used as promoters for the recognition of the electron transfer

    between a horse heart cyctochrome c and the substrate electrode (Figure 1.8a).[97]

    Additionally, these modified systems were able to recognize the structure of the redox center

    of the cyctochrome c. Such electrodes could find additional applications for studies of theelectron transfer path of various electron transfer proteins. Huisman et al. demonstrated the

    synthesis of metallo-dendrimers functionalized with sulfide moieties for the attachment onto

    gold substrates.[101] A decanethiol monolayer was modified with dendritic sulfide adsorbates

    under varying adsorption times. Thereby, the alkylthiol molecules were desorbed from the

    surface and the dendrimers were adsorbed onto the substrate. The successful attachment of the

    palladium containing dendrimer was proven by secondary ion mass spectrometry

    experiments, which revealed a characteristic fragmentation pattern of the palladium ligand.

    Gupta and co-workers demonstrated the synthesis of an osmium bipyridyl complex

    functionalized with a trimethoxy group, which could be used for the attachment onto silicon

    and glass substrates (Figure 1.8b).[78] The reversible switching between Os2+/Os3+ was

  • 7/30/2019 sam chemistry.pdf

    27/164

    Chemical modification of self-assembled monolayers by surface reactions

    17

    performed in solutions of ammonium hexanitratocerate(IV) and bis(cyclopentadienyl)cobalt

    as oxidizing and reducing agents in acetonitrile and revealed at least 25 redox cycles, which

    were identified by UV/vis transmission spectroscopy. Furthermore, it could be demonstrated

    that these monolayers were suitable candidates for the fabrication of sensor systems

    concerning the detection of water in organic solvents, NO+ cations and FeCl3 in organic and

    aqueous solutions.[79,98,99] The detection of water was performed by activating the Os2+

    complex with Ce(NO3)6 to obtain monolayer-based Os3+ species. These complexes were

    completely reduced to Os2+ in the presence of water after 1.5 hour. Experiments concerning

    the quantification of the amount of water revealed a water detection limit between 10 and 300

    ppm. The treatment of the monolayer modified electrode with solutions of NO+ ions or FeCl3

    resulted in an one-electron transfer process, changing the oxidation state from Os2+ to Os3+,

    which could be followed by UV/vis spectroscopy. The formed iron(II) ions could be optically

    detected by the addition of 2,2-bipyridyl, which resulted in the formation of a [Fe(bipy)3]2+

    complex. The reversibility of the sensor systems was shown by the addition of water, which

    resulted in the complete reduction of the Os3+ species back to Os2+. Furthermore, the authors

    reported the fabrication of a redox-active monolayer system. [95] Thereby, an information

    transfer between two interfaces, functionalized with osmium and ruthenium bipyridyl

    complexes, was triggered by Fe(II)/(III) metal ions as electron carriers. Such systems could

    effectively be used for the fabrication of advanced interfacial communication systems. Sortino

    et al. reported the synthesis of a sulfide functionalized Ru(III/II) (NH3)5-(N-undecyl dodecyl

    sulfide)-4,4-bipyridinium (PF6)n complex for the self-assembly onto ultrathin platinum

    films.[91] The reversible switching between Ru(II) and Ru(III) was demonstrated by alternatingoxidation/reduction cycles with cerium(IV) sulphate and hydrazine as oxidizing and reducing

    agents. UV/vis measurements revealed the optical proof of the switching by the disappearance

    and restoration of the metal-to-ligand-charge-transfer (MLCT) absorption band at 530 nm of

    the Ru(II) complex. Sato and co-workers studied a ligand substitution reaction of oxo-

    centered triruthenium complexes, which were assembled onto gold electrodes (Figure

    1.8c).[100] This could be of interest for the fabrication of multilayer assemblies prepared by the

    layer-by-layer approach.

    A second method for the construction of supramolecular metal assemblies onto solidsubstrates relies on the attachment of the metal complex to a functional substrate via surface

    chemistry. Sortino et al. reported the three step synthesis of a redox-switch dipolar

    ruthenium(III/II) (4,4-bipyridinium) complex bearing five NH3 ligands onto platinum

    substrates (Figure 1.9).[92] This modification sequence included the chemisorption of

    11-mercaptoundecanoic acid onto Pt, reaction with SOCl2 to yield reactive acyl chlorides and

    subsequent quaternization with Ru(II) (NH3)5-4,4-bipyridine (PF6)2. XPS was performed and

    revealed a quantitative acylation. UV/vis spectroscopy was performed to analyze the complex

    attached to the substrate and showed an absorption band at 588 nm, which could be assigned

    to the quarternized Ru complex.

  • 7/30/2019 sam chemistry.pdf

    28/164

    Chapter 1

    18

    a. b. c.

    OHO

    S

    ClO

    S

    ON

    N

    RuH

    3N

    H3N

    NH3

    NH3

    NH3

    S

    +

    2+

    a. b. c.

    OHO

    S

    ClO

    S

    ON

    N

    RuH

    3N

    H3N

    NH3

    NH3

    NH3

    S

    +

    2+

    Figure 1.9.Schematic representation of the functionalization of platinum substrates with a

    dipolar ruthenium(III/II) (4,4-bipyridinium) complex bearing five NH3 ligands. (a)

    Chemisorption of 11-mercaptoundecanoic acid, (b) reaction with SOCl2 and (c)

    quaternization with Ru(II) (NH3)5-4,4-bipyridine (PF6)2.

    Shukla and co-workers demonstrated the formation of a ruthenium based monolayer onto

    glass, indium tin oxide modified glass and silicon supports.[102] The functional monolayer was

    obtained by the coupling of surface bounded benzyl halides with a phenol terminated

    tris(bipyridyl)-ruthenium complex. Surface sensitive characterization tools, e.g. AFM, XPS,UV/vis spectroscopy and cyclic voltammetry, were performed to characterize the resulting

    monolayer and revealed the reversible switching of the oxidation state of the metal center.

    Mashazi et al. described the fabrication of metal phthalocyanine modified sensors for the

    detection of cysteine and hydrogen peroxide.[103-105] Therefore, these surfaces were modified

    with a monolayer of metal (Co, Fe, Mn) tetracarboxylic acid phthalocyanines via a two step

    synthesis starting from the self-assembly of mercaptoethanol onto gold, followed by the

    reaction with metal coordinated tetracarboxylic acid chloride phthalocyanine. Another

    convenient coupling procedure uses the 1,3-dipolar cycloaddition of azides andacetylenes.[47,48] Collman and co-workers used this modification sequence for the synthesis of

    acetylene modified porphyrin and ferrocene species and subsequent attachment to mixed

    monolayers consisting of terminal azide and methyl groups onto gold substrates.[106] The

    authors furthermore investigated the electron transfer rates to the acetylene functionalized

    redox species, which revealed a dependence on the length and degree of conjugation of the

    N3 terminated thiol and on the length of the surrounding thiol. The authors additionally

    presented the synthesis of alkyne functionalized cytochrome c oxidase models for the

    immobilization onto Au.

    [107,108]

    The successful attachment of the metal complexes wasidentified by cyclic voltammetry and IR spectroscopy by the disappearance of the absorption

    band at 2100 cm-1. Such surfaces could be of importance to understand the influence of the

  • 7/30/2019 sam chemistry.pdf

    29/164

    Chemical modification of self-assembled monolayers by surface reactions

    19

    redox-active components in the active site of cytochrome c oxidase during the reduction of

    dioxygen to water. Crespo-Biel and co-workers investigated the multivalent binding of copper

    and nickel ions containing supramolecular complexes onto cyclodextrin terminated gold

    surfaces.[85] The complexes were obtained by reaction of an adamantly functionalized

    ethylenediamine with CuCl2 and NiCl2, respectively. The binding of the complexes was

    studied depending on the pH value by using surface plasmon resonance spectroscopy, which

    revealed a divalent binding for the Cu(II) and the Ni(II) ion systems.

    Next to the previously described methods another possibility to functionalize solid substrates

    with metal complexes relies on the covalent binding of functional ligand systems onto the

    surface and subsequent complexation reactions. Tuccitto and co-workers described the

    patterned attachment of 4-(4-mercaptophenyl)-2,2:6,2-terpyridine onto gold substrates via

    Au-S bonding.[109] Subsequent reaction with a Fe(II) salt resulted in the formation of iron

    terpyridine complexes, which were used for the specific non-covalent interaction with

    lactoferrin. Nishimori et al. reported the construction of molecular wires of linear and

    branched bis-terpyridine complexes, which is shown in Figure 1.10. [110] For this purpose, a

    thiol terminated terpyridine molecule was assembled onto gold and was subsequently

    complexed with Fe(II) ions. Stepwise addition of a two-way-bridging or three-way-bridging

    ligand and metal ions resulted in the formation of linear or branched oligomer wires. This

    research could be used for the investigation and the fabrication of molecular electronic

    devices.

  • 7/30/2019 sam chemistry.pdf

    30/164

    Chapter 1

    20

    a. b.

    S

    N

    NNN

    N

    S

    N

    N

    NN

    N

    NN

    Fe

    N

    NNN

    2+

    2 BF4-

    N

    N

    N

    N

    N

    N

    N

    NN

    N

    NN

    Fe

    S

    NN

    2+

    2 BF4-

    a. b.

    S

    N

    NNN

    N

    S

    N

    N

    NN

    N

    NN

    Fe

    N

    NNN

    2+

    2 BF4-

    S

    N

    N

    NN

    N

    NN

    Fe

    N

    NNN

    2+

    2 BF4-

    N

    N

    N

    N

    N

    N

    N

    NN

    N

    NN

    Fe

    S

    NN

    2+

    2 BF4-

    N

    N

    N

    N

    N

    N

    N

    NN

    N

    NN

    Fe

    S

    NN

    2+

    2 BF4-

    Figure 1.10. Schematic representation of the construction of molecular wires of (a) linear

    and (b) branched bis-terpyridine complexes on gold substrates.

    The construction of a two-dimensional network consisting of gold nanoparticles attached to

    each othervia supramolecular interactions was demonstrated by Hobara and co-workers.[111]

    Four differently modified thiol terpyridine systems were used for the attachment onto Au

    particles, followed by the transfer onto a silicon substrate covered with a layer of SiO2. The

    complexation with iron(II) ions led to the formation of a network with a conductivity, which

    was 4 to 5 times higher then the non-conjugated derivative. Such devices represent potential

    candidates for the development of high-performance molecular devices. The functionalization

    of gold surfaces with dendritic structures via metal coordination was demonstrated by van

    Manen and Wanunu.[112,113] Van Manen and co-workers prepared monolayers consisting ofdendritic wedges by the insertion of pyridine terminated dendritic structures with a terminal

  • 7/30/2019 sam chemistry.pdf

    31/164

    Chemical modification of self-assembled monolayers by surface reactions

    21

    sulfide group into decanethiol terminated gold surfaces.[112] Tapping mode AFM

    characterization revealed an increase of height of 3.3 nm after the functionalization. The

    pyridine moieties were afterwards coordinated with second generation dendritic wedges

    functionalized with a focal SCS (sulfur-carbon-sulfur) Pd(II) pincer moiety. AFM studies

    showed nano-sized features ranging from 3.1 to 7.5 nm indicating that not all pyridine

    moieties were coordinated. Wanunu et al. reported the divergent growth of coordination

    dendrimers on surfaces.[113] A hydroxamate ligand functionalized with disulfide moieties was

    self-assembled onto gold and was subsequently reacted with Zr4+ ions, followed by the

    addition of linear or branched hydroxamate ligands for the preparation of dendritic structures.

    The introduction of functional groups into the ligand systems could be used for the

    amplification of the surface properties as well as for multiple derivatization routes via

    dendritic growth.

    The functionalization of solid substrates via metallo-supramolecular interactions leads to the

    tailoring of the surface properties in a controllable fashion. The modification with metal

    complexes allows the introduction of interesting optical and electrical properties. These

    systems can change their properties by changes in the environment, such as temperature or pH

    value. As a consequence, it is possible to use these substrates for the construction of smart

    surfaces and, in particular, for sensor systems.

    1.5. Aim and scope of the thesis

    The functionalization of surfaces by means of self-assembled monolayers represents an activearea of research that offers versatile possibilities for the tailoring of surface properties in a

    controlled fashion. In particular alkyl silane precursor molecules are interesting, because they

    form chemically and physically stable monomolecular layers on various substrates. The

    modification of the terminal end groups allows the tuning of the surface properties. This thesis

    focuses on the modification and characterization of functional self-assembled monolayers by

    means of chemical surface reactions. Furthermore, structuring of the monolayers was

    performed to obtain bifunctional surfaces with different functional groups, which were

    subsequently used to enable the selective binding of nanomaterials, to perform surfacechemistry on the nanometer scale and to initiate the growth of polymer brushes.

    Chapter 1 highlights a selection of chemical surface reactions from literature for the

    introduction of functional moieties into the monolayer. Thereby, special interest was placed

    on nucleophilic displacement reactions, the click chemistry approach and the modification of

    surfaces with metallo-supramolecular binding motifs. Literature examples are discussed to

    show the potential of these synthetic pathways for the modification of surfaces with various

    functionalities.

    Chapter 2 describes the functionalization and characterization of silicon and glass supports by

    the copper catalyzed Huisgen 1,3-dipolar cycloaddition. Thereby, differently substituted

    acetylene compounds, e.g. a fluorescent coumarin dye, propargyl alcohol and poly(oxazoline),

  • 7/30/2019 sam chemistry.pdf

    32/164

    Chapter 1

    22

    were coupled to azide terminated substrates under conventional and microwave-assisted

    reaction conditions. The functionalized monolayers were characterized concerning the

    chemical conversion as well as the integrity of the modified SAM.

    Chapter 3 discusses the surface modification by the combination of different chemical

    reaction sequences. The first part demontrates the nucleophilic substitution on bromine

    terminated silicon supports with functional amines. The obtained surface moieties were used

    in various post-modification reactions, e.g. click chemistry and complexation with a

    polymeric ruthenium complex. Supramolecular functionalization with terpyridine metal

    complexes is presented in the second part of the chapter. The modification with Fe(II) bis-

    terpyridine building blocks resulted in the formation of switchable supramolecular binding

    motifs on the surface, which were opened and closed by an external trigger and were

    subsequently complexed with various transition metal ions.

    Chapter 4 reviews the patterning of self-assembled monolayers by electro-oxidative

    lithographic methods to fabricate chemically active surface templates. Thereby, the local

    anodic oxidation and the constructive nanolithography will be discussed in more detail. The

    first method creates silicon oxide features on a large variety of different substrates. These

    features can be used for further modifications, e.g. self-assembly of other self-organizing

    molecules, nanoparticles etc. The second patterning technique allows the introduction of

    chemically active surface templates, which can be used for the guided assembly of

    nanoparticles, precursor molecules and the performance of nanometer-sized surface

    chemistry.

    Chapter 5 demonstrates the patterning of bromine and n-octadecyltrichlorosilane (OTS)terminated substrates by local anodic oxidation and constructive nanolithography,

    respectively. Post-modification reactions on bromine/silicon oxide surface templates were

    used to guide the assembly of nanoparticles in a regio- and chemoselective fashion. Surface

    patterns of OTS and carboxylic acid functionalities were applied in a second self-assembly

    step to yield bromine terminated nanofeatures for subsequent click chemistry reactions on the

    nanometer scale.

    Chapter 6 deals with the patterning of OTS monolayers by the constructive nanolithography

    technique utilizing a metal stamp to create micrometer-sized surface templates. These patternswere used for the grafting from approach of styrene and L-lactide. Two different

    polymerization techniques, the atom transfer radical polymerization (ATRP) and the ring-

    opening polymerization (ROP), were applied to obtain covalently anchored polymer brushes.

    Atomic force microscopy was performed to characterize the height of the brushes as well as

    the surface morphology.

  • 7/30/2019 sam chemistry.pdf

    33/164

    Chemical modification of self-assembled monolayers by surface reactions

    23

    1.6. References

    [1] J. Sagiv,J. Am. Chem. Soc.1980, 102, 9298.

    [2] R. G. Nuzzo, D. L. Allara,J. Am. Chem. Soc.1983, 105, 44814483.

    [3] M. D. Porter, T. B. Bright, D. L. Allara, C. E. D. Chidsey,J. Am. Chem. Soc.1987,

    109, 35593568.

    [4] S. E. Creager, G. K. Rowe,Anal. Chim. Acta 1991, 246, 233239.

    [5] A. Ulman, Chem. Rev. 1996, 96, 15331554.

    [6] L. Netzer, J. Sagiv,J. Am. Chem. Soc.1983, 105, 674676.

    [7] S. R. Wasserman, Y.-T. Tao, G. M. Whitesides,Langmuir1989, 5, 10741087.

    [8] R. Maoz, J. Sagiv,J. Colloid Interface Sci.1984, 100, 465496.

    [9] J. Gun, R. Iscovici, J. Sagiv,J. Colloid Interface Sci.1984, 101, 201213.

    [10] J. Gun, J. Sagiv,J. Colloid Interface Sci.1986, 112, 457472.

    [11] M. Mrksich, G. M. Whitesides, Trends Biotechnol.1995, 13, 228235.[12] R. K. Smith, P. A. Lewis, P. S. Weiss,Prog. Surf. Sci.2004, 75, 168.

    [13] E. Ruckenstein, Z. F. Li,Adv. Colloid Interface Sci.2005, 113, 4363.

    [14] N. K. Chaki, K. Vijayamohanan,Biosens. Bioelectron.2002, 17, 112.

    [15] A. N. Parikh, D. L. Allara, I. B. Azouz, F. Rondelez,J. Phys. Chem.1994, 98, 7577

    7590.

    [16] D. K. Aswal, S. Lenfant, D. Guerin, J. V. Yakhmi, D. Vuillaume, Anal. Chim. Acta

    2006, 568, 84108.

    [17] B. Pignataro, A. Licciardello, S. Cataldo, G. Marletta,Mater. Sci. Eng. C2003, 23, 712.

    [18] S. Morgenthaler, C. Zink, N. D. Spencer, Soft Matter2008, 4, 419438.

    [19] R. Maoz, J. Sagiv,Langmuir1987, 3, 10451051.

    [20] ABCR catalog, Gelest Inc. 2000.

    [21] L. Netzer, R. Iscovici, J. Sagiv, Thin Solid Films1983, 99, 235241.

    [22] T. Lummerstorfer, H. Hoffmann,J. Phys. Chem. B2004, 108, 39633966.

    [23] T. P. Sullivan, W. T. S. Huck,Eur. J. Org. Chem.2003, 1723.

    [24] S. Onclin, B. J. Ravoo, D. N. Reinhoudt,Angew. Chem. Int. Ed.2005, 44, 62826304.

    [25] V. Chechik, R. M. Crooks, C. J. M. Stirling,Adv. Mater.2000, 12, 11611171.

    [26] X.-M. Li, J. Huskens, D. N. Reinhoudt,J. Mater. Chem.2004, 14, 29542971.

    [27] M. A. Fox, J. K. Whitesell, in Organische Chemie: Grundlagen, Mechanismen,

    bioorganische Anwendungen, Spektrum Akademischer Verlag GmbH

    HeidelbergBerlinOxford 1995.

    [28] T. W. G. Solomons, in Organic Chemistry, 6th edition, John Wiley & Sons, Inc. 1996.

    [29] H. Finkelstein,Ber. Dtsch. Chem. Ges. 1910, 43, 15281532.

    [30] N. Balachander, C. N. Sukenik, Tetrahedron Lett.1988, 29, 55935594.

    [31] N. Balachander, C. N. Sukenik,Langmuir1990, 6, 16211627.

  • 7/30/2019 sam chemistry.pdf

    34/164

    Chapter 1

    24

    [32] G. E. Fryxell, P. C. Rieke, L. L. Wood, M. H. Engelhard, R. E. Williford, G. L. Graff,

    A. A. Campbell, R. J. Wiacek, L. Lee, A. Halverson,Langmuir1996, 12, 50645075.

    [33] M. V. Baker, J. D. Watling,Langmuir1997, 13, 20272032.

    [34] A. Heise, M. Stamm, M. Rauscher, H. Duschner, H. Menzel, Thin Solid Films 1998,

    327-329, 199203.

    [35] A. Heise, H. Menzel, H. Yim, M. D. Foster, R. H. Wieringa, A. J. Schouten, V. Erb,

    M. Stamm,Langmuir1997, 13, 723728.

    [36] M.-T. Lee, G. S. Ferguson,Langmuir2001, 17, 762767.

    [37] Y. Wang, J. Cai, H. Rauscher, R. J. Behm, W. A. Goedel, Chem. Eur. J.2005, 11,

    39683978.

    [38] J. A. Chupa, S. Xu, R. F. Fischetti, R. M. Strongin, J. P. McCauley Jr., A. B. Smith III,

    J. K. Blasie, L. J. Peticolas, J. C. Bean,J. Am. Chem. Soc. 1993, 115, 4834384.

    [39] Y. Ofir, N. Zenou, I. Goykhman, S. Yitzchaik, J. Phys. Chem. B 2006, 110, 80028009.

    [40] R. Sfez, L. De-Zhong, I. Turyan, D. Mandler, S. Yitzchaik,Langmuir2001, 17, 2556

    2559.

    [41] T. S. Koloski, C. S. Dulcey, Q. J. Haraldson, J. M. Calvert,Langmuir1994, 10, 3122

    3133.

    [42] A. C. Templeton, M. J. Hostetler, C. T. Kraft, R. W. Murray,J. Am. Chem. Soc.1998,

    120, 19061911.

    [43] Y. W. Lee, J. Reed-Mundell, C. N. Sukenik, J. E. Zull,Langmuir1993, 9, 30093014.[44] W. H. Binder, R. Sachsenhofer,Macromol. Rapid Commun.2007, 28, 1554.

    [45] W. H. Binder, R. Sachsenhofer,Macromol. Rapid Commun.2008, 29, 952981.

    [46] J.-F. Lutz,Angew. Chem. Int. Ed.2007, 46, 10181025.

    [47] H. C. Kolb, M. G. Finn, K. B. Sharpless,Angew. Chem. Int. Ed.2001, 40, 20042021.

    [48] R. Huisgen, in 1,3-Dipolar Cycloaddition Chemistry, Wiley: New York1984.

    [49] R. Huisgen,Angew. Chem. Int. Ed. 1963, 2, 565632.

    [50] C. W. Torne, C. Christensen, M. Meldal,J. Org. Chem. 2002, 67, 30573064.

    [51] V. V. Rostovtsev, L. G. Green, V. V. Fokin, K. B. Sharpless,Angew. Chem. Int. Ed.

    2002, 41, 25962599.

    [52] N. K. Devaraj, J. P. Collman, QSAR Comb. Sci.2007, 26, 12531260.

    [53] I. S. Choi, Y. S. Chi,Angew. Chem. Int. Ed.2006, 45, 48944897.

    [54] M. V. Gil, M. J. Arvalo, . Lpez, Synthesis2007, 11, 15891620.

    [55] S. Prakash, T. M. Long, J. C. Selby, J. S. Moore, M. A. Shannon,Anal. Chem.2007,

    79, 16611667.

    [56] S. Sawoo, P. Dutta, A. Chakraborty, R. Mukhopadhyay, O. Bouloussa, A. Sarkar,

    Chem. Commun.2008, 59575959.

    [57] A. G. Marrani, E. A. Dalchiele, R. Zanoni, F. Decker, F. Cattaruzza, D. Bonifazi, M.Prato,Electrochim. Acta2008, 53, 39033909.

  • 7/30/2019 sam chemistry.pdf

    35/164

    Chemical modification of self-assembled monolayers by surface reactions

    25

    [58] R. Vestberg, M. Malkoch, M. Kade, P. Wu, V. V. Fokin, K. B. Sharpless, E.

    Drockenmuller, C. J. Hawker,J. Polym. Sci.: Part A: Polym. Chem.2007, 45, 2835

    2846.

    [59] C. Gauchet, G. R. Labadie, C. D. Poulter,J. Am. Chem. Soc. 2006, 128, 92749275.

    [60] T. Govindaraju, P. Jonkheijm, L. Gogolin, H. Schroeder, C. F. W. Becker, C. M.

    Niemeyer, H. Waldmann, Chem. Commun.2008, 37233725.

    [61] P.-C. Lin, S.-H. Ueng, M.-C. Tseng, J.-L. Ko, K.-T. Huang, S.-C. Yu, A. K. Adak, Y.-

    J. Chen, C.-C. Lin,Angew. Chem. Int. Ed. 2006, 45, 42864290.

    [62] R. D. Rohde, H. D. Agnew, W.-S. Yeo, R. C. Bailey, J. R. Heath,J. Am. Chem. Soc.

    2006, 128, 95189525.

    [63] R.-V. Ostaci, D. Damiron, S. Capponi, G. Vignaud, L. Lger, Y. Grohens, E.

    Drockenmuller,Langmuir2008, 24, 27322739.

    [64] C. M. Yam, A. K. Kakkar,J. Chem. Soc., Chem. Commun. 1995, 907909.[65] C. M. Yam, A. J. Dickie, A. K. Kakkar,Langmuir2002, 18, 84818487.

    [66] S. Ciampi, T. Bcking, K. A. Kilian, M. James, J. B. Harper, J. J. Gooding,Langmuir

    2007, 23, 93209329.

    [67] S. Ciampi, G. Le Saux, J. B. Harper, J. J. Gooding,Electroanalysis 2008, 20, 1513

    1519.

    [68] S. Ciampi, T. Bcking, K. A. Kilian, J. B. Harper, J. J. Gooding,Langmuir2008, 24,

    58885892.

    [69] L. Britcher, T. J. Barnes, H. J. Griesser, C. A. Prestidge,Langmuir2008, 24, 76257627.

    [70] D. A. Long, K. Unal, R. C. Pratt, M. Malkoch, J. Frommer, Adv. Mater. 2007, 19,

    44714473.

    [71] N. D. Gallant, K. A. Lavery, E. J. Amis, M. L. Becker, Adv. Mater.2007, 19, 965

    969.

    [72] X.-L. Sun, C. L. Stabler, C. S. Cazalis, E. L. Chaikof,Bioconjugate Chem.2006, 17,

    5257.

    [73] T. S. Seo, X. Bai, H. Ruparel, Z. Li, N. J. Turro, J. Ju, Proc. Natl. Acad. Sci. USA

    2004, 101, 54885493.

    [74] T. S. Seo, X. Bai, D. H. Kim, Q. Meng, S. Shi, H. Ruparel, Z. Li, N. J. Turro, J. Ju,

    Proc. Natl. Acad. Sci. USA2005, 102, 59265931.

    [75] J.-C. Meng, G. Siuzdak, M. G. Finn, Chem. Commun.2004, 21082109.

    [76] J.-C. Meng, C. Averbuj, W. G. Lewis, G. Siuzdak, M. G. Finn,Angew. Chem. Int. Ed.

    2004, 43, 12551260.

    [77] Y. Zhang, Y. Tong, M. Abe, K. Uosaki, M. Osaka, Y. Sasaki, S. Ye,J. Mater. Chem.

    2009, 19, 261267.

    [78] T. Gupta, M. Altman, A. D. Shukla, D. Freeman, G. Leitus, M. E. van der Boom,Chem. Mater. 2006, 18, 13791382.

  • 7/30/2019 sam chemistry.pdf

    36/164

    Chapter 1

    26

    [79] T. Gupta, M. E. van der Boom,J. Am. Chem. Soc. 2007, 129, 1229612303.

    [80] S. Sortino, S. Di Bella, S. Conoci, S. Petralia, M. Tomasulo, E. J. Pacsial, F. M.

    Raymo,Adv. Mater. 2005, 17, 13901393.

    [81] S. Onclin, A. Mulder, J. Huskens, B. J. Ravoo, D. N. Reinhoudt,Langmuir2004, 20,

    54605466.

    [82] A. Mulder, S. Onclin, M. Pter, J. P. Hoogenboom, H. Beijleveld, J. ter Maat, M. F.

    Garca-Paraj, B. J. Ravoo, J. Huskens, N. F. van Hulst, D. N. Reinhoudt, Small2005,

    1, 242253.

    [83] C. A. Nijhuis, J. K. Sinha, G. Wittstock, J. Huskens, B. J. Ravoo, D. N. Reinhoudt,

    Langmuir2006, 22, 97709775.

    [84] S. Onclin, J. Huskens, B. J. Ravoo, D. N. Reinhoudt, Small2005, 1, 852857.

    [85] O. Crespo-Biel, C. W. Lim, B. J. Ravoo, D. N. Reinhoudt, J. Huskens,J. Am. Chem.

    Soc. 2006, 128, 1702417032.[86] V. B. Sadhu, A. Perl, X. Duan, D. N. Reinhoudt, J. Huskens, Soft Matter 2009, 5,

    11981204.

    [87] O. Crespo-Biel, B. J. Ravoo, J. Huskens, D. N. Reinhoudt,Dalton Trans. 2006, 2737

    2741.

    [88] O. Crespo-Biel, B. J. Ravoo, D. N. Reinhoudt, J. Huskens,J. Mater. Chem. 2006, 16,

    39974021.

    [89] C. A. Nijhuis, B. J. Ravoo, J. Huskens, D. N. Reinhoudt, Coord. Chem. Rev. 2007,

    251, 17611780.[90] D. I. Rozkiewicz, W. Brugman, R. M. Kerkhoven, B. J. Ravoo, D. N. Reinhoudt,J.

    Am. Chem. Soc.2007, 129, 1159311599.

    [91] S. Sortino, S. Petralia, S. Conoci, S. Di Bella,Mater. Sci. Eng. C2003, 23, 857860.

    [92] S. Sortino, S. Petralia, S. Conoci, S. Di Bella, J. Am. Chem. Soc. 2003, 125, 1122

    1123.

    [93] T. P. Russell, Science2002, 297, 964967.

    [94] J. A. Crowe, J. Genzer,J. Am. Chem. Soc. 2005, 127, 1761017611.

    [95] T. Gupta, M. E. van der Boom,Angew. Chem. Int. Ed. 2008, 47, 22602262.

    [96] K. I. Ozoemena, T. Nyokong, P. Westbroek,Electroanalysis2003, 14, 17621770.

    [97] I. Takahashi, T. Inomata, Y. Funahashi, T. Ozawa, K. Jitsukawa, H. Masuda, Chem.

    Commun. 2005, 471473.

    [98] T. Gupta, R. Cohen, G. Evmenenko, P. Dutta, M. E. van der Boom,J. Phys. Chem. C

    2007, 111, 46554660.

    [99] T. Gupta, M. E. van der Boom,J. Am. Chem. Soc. 2006, 128, 84008401.

    [100] A. Sato, M. Abe, T. Inomata, T. Kondo, S. Ye, K. Uosaki, Y. Sasaki, Phys. Chem.

    Chem. Phys.2001, 3, 34203426.

  • 7/30/2019 sam chemistry.pdf

    37/164

    Chemical modification of self-assembled monolayers by surface reactions

    27

    [101] B.-H. Huisman, H. Schnherr, W. T. S. Huck, A. Friggeri, H.-J. van Manen, E.

    Menozzi, G. J. Vancso, F. C. J. M. van Veggel, D. N. Reinhoudt, Angew. Chem. Int.

    Ed. 1999, 38, 22482251.

    [102] A. D. Shukla, A. Das, M. E. van der Boom,Angew. Chem. Int. Ed. 2005, 44, 3237

    3240.

    [103] P. N. Mashazi, K. I. Ozoemena, D. M. Maree, T. Nyokong,Electrochim. Acta 2006,

    51, 34893494.

    [104] P. N. Mashazi, K. I. Ozoemena, T. Nyokong,Electrochim. Acta 2006, 52, 177186.

    [105] P. N. Mashazi, P. Westbroek, K. I. Ozoemena, T. Nyokong,Electrochim. Acta 2007,

    53, 18581869.

    [106] N. K. Devaraj, R. A. Decrau, W. Ebina, J. P. Collman, C. E. D. Chidsey, J. Phys.

    Chem. B2006, 110, 1595515962.

    [107] R. A. Decrau, J. P. Collman, Y. Yang, Y. Yan, N. K. Devaraj,J. Org. Chem. 2007,72, 27942802.

    [108] J. P. Collman, N. K. Devaraj, R. A. Decrau, Y. Yang, Y.-L. Yan, W. Ebina, T. A.

    Eberspacher, C. E. D. Chidsey, Science2007, 315, 15651568.

    [109] N. Tuccitto, N. Giamblanco, A. Licciardello, G. Marletta, Chem. Commun. 2007,

    26212623.

    [110] Y. Nishimori, K. Kanaizuka, M. Murata, H. Nishihara, Chem. Asian. J. 2007, 2, 367

    376.

    [111] D. Hobara, S. Kondo, M.-S. Choi, Y. Ishioka, S. Hirata, M. Murata, K. Azuma, J.Kasahara,Phys. Status Solidi A2007, 204, 17061711.

    [112] H.-J. van Manen, T. Auletta, B. Dordi, H. Schnherr, G. J. Vansco, F. C. J. M. van

    Veggel, D. N. Reinhoudt,Adv. Funct. Mater. 2002, 12, 811818.

    [113] M. Wanunu, A. Vaskevich, A. Shanzer, I. Rubinstein,J. Am. Chem. Soc. 2006, 128,

    83418349.

  • 7/30/2019 sam chemistry.pdf

    38/164

  • 7/30/2019 sam chemistry.pdf

    39/164

    CChhaapptteerr22

    CChheemmiiccaall ssuurrffaaccee mmooddiiffiiccaattiioonn bbyy cclliicckkcchheemmiissttrryy

    Abstract

    The functionalization of surfaces and the ability to tailor their properties with desired

    physico-chemical functions is an important field of research with a broad spectrum of

    potential applications. These applications range from the modification of wetting propertiesover the alteration of optical properties to the fabrication of molecular electronic devices. In

    each of these fields it is of specific importance to be able to control the quality of the layers

    with high precision. As a potential chemical surface reaction the 1,3-dipolar cycloaddition

    attracted significant attention during the last years. Thereby, acetylenes or azide terminated

    surfaces led to the formation of triazole terminated monolayers on different substrates. The

    1,3-dipolar cycloaddition was performed under conventional heating as well as under

    microwave irradiation. Functional acetylene derivatives, such as fluorescent dyes, small

    organic compounds and polymers, were attached onto azide terminated silicon and glass

    surfaces. The thermal and chemical stability of the precursor monolayers under microwave

    irradiation as well as the optimization of the chemical surface reactions were investigated.

    Based on this approach, a large variety of functional groups can be potentially introduced

    onto various substrates leading to the possibility to tune the surface properties.

    Parts of this chapter have been published: C. Haensch, S. Hoeppener, U. S. Schubert,

    Nanotechnology2008, 19, 035703/17; M. W. M. Fijten, C. Haensch, B. M. van Lankvelt, R.

    Hoogenboom, U. S. Schubert,Macromol. Chem. Phys. 2008, 209, 18871895; C. Haensch, T.Erdmenger, M. W. M. Fijten, S. Hoeppener, U. S. Schubert,Langmuir2009, 25, 80198024.

  • 7/30/2019 sam chemistry.pdf

    40/164

    Chapter 2

    30

    2.1. Introduction

    Surface modification of solid substrates by self-assembled monolayers is an interesting

    research area to functionalize surfaces with tailor-made properties.[1] Extensive work has been

    performed on the self-assembly of alkyl thiol and alkyl silane monolayers that are known to

    form stable, covalently anchored monomolecular layers on a variety of substrates, e.g. gold,

    silver, glass or silicon. In particular, the silane chemistry is of interest for practical

    applications, because of the physical and chemical stability of silanes and the technologically

    relevant substrates, which can be used for surface modification.[2] These alkylsiloxane

    monolayers are generally formed by an adsorption process of surfactant molecules, such as

    alkyltrichlorosilanes (R-SiCl3), alkyltrimethoxysilanes (R-Si(OMe)3) or alkyltriethoxysilanes

    (R-Si(OEt)3), onto solid substrates.[3] The introduction of other chemical functionalities can be

    performed by subsequent surface modifications. One class of chemical reactions that is

    compatible with the requirements of chemical surface functionalization routes, such as high

    yields, high selectivity and the generation of inoffensive by-products, is the so-called click

    chemistry approach.[4-6] This is nowadays a widely used concept that has, since its

    introduction in 2001 by Sharpless,[4] found countless applications in various fields, e.g.

    polymer chemistry,[7-10] cellulose chemistry,[11] surface modification[12-18] and others. In

    particular, the Huisgen 1,3-dipolar cycloaddition reaction[19] of terminal acetylenes and azides

    is known as one of the most perfectly working click reactions. The first report on click

    chemistry on solid substrates was published by Lummerstorfer and Hoffmann.[19] Since then a

    large variety of literature examples showed the potential of this modification sequence tointroduce functional groups into the monolayer under conventional heating conditions.

    Whereas the use of microwaves in organic and macromolecular synthesis has developed into

    an emerging field of basic and applied chemistry,[20-29] the utilization in surface

    functionalization is up to now rarely reported. However, the decrease of the reaction times

    from hours to minutes, the improvement of reaction yields, solvent-free reaction conditions,

    suppression of the formation of side products and the improvement of the reproducibility are

    major advantages of microwave heating compared to conventional heating.[23,30-32] The

    implementation of this technique into the field of surface functionalization holds promise for asimplified, fast and straightforward modification of solid substrates. In particular, in the field

    of surface chemistry the effective tuning of surface properties represents a key step towards